miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST000773
species:
Gossypium hirsutum
miRNA family:
MIR159
source:
miRNEST
Taxonomy by NCBI:
Gossypium hirsutum
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCTGCTTGGCTATGGATCCC
miRNA*
GCTCCATATCTCAGGAGCTTCA
mismatches:
4
bulges:
1
View larger
pre-miRNA
AAGAAGGTGGGGGGTTAGGAATGGAGCTCCTTGAAGTCAATAGAGTTTCTTGCTGGGTATATTG
AGCTGCTTGGCTATGGATCCC
ACAGTCCTATCCCAT
GGTTGGAGGGATAGGCTTGCGG
GCTCCATATCTCAGGAGCTTCA
TTACCTTTAAAAGTAGAATCCTTGTTTGGATTGGAGGGAGCTCTACATCTTCTCCT
TTCTC
dot-bracket secondary structure
.....((.((((((..(((..(((((((((((....((((..(((.((((....(((((...((
((((.((.((.((((((.(((
.(((.((((((((..
.......)))))))).))).))
).)))))).)).)).))).)))
.)))))........))))..)))..)))).....)))))))))))..))).)))))
).)).
SIMILARITIES
miRBase
ptc-MIR159c
:
7e-16
PMRD
ptc-miRf10271-akr
:
7e-16
microPC
miR159
:
3e-18
UniProt
no hits
RFAM
MIR159: 0.00000000000001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record