ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGCGCCAATATCACT miRNA* CGATGTTGGTGAGGTTCAATC mismatches: 2 bulges: 0 |
pre-miRNA
AAGAAAAGAAAGCGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATCAC
TTTCCACATC
dot-bracket secondary structure
.......(((((.((((((((((.(((((((((.((.((((..(((((((..........)))))))...)).)))).))))))))).)))))))))).)
))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAAAAGAAAGCGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATCAC
TTTCCACATC
dot-bracket secondary structure
.......(((((.((((((((((.(((((((((.((.((((..(((((((..........)))))))...)).)))).))))))))).)))))))))).)
))))......
SIMILARITIES| miRBase tcc-MIR171c: 1e-46 PMRD ghr-miR171: 5e-43 microPC miR171: 1e-46 | UniProt no hits RFAM MIR171_1: 3e-29 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST046236) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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