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ABOUT THIS RECORD

ID: MNEST000777
species: Gossypium hirsutum
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGGCAGCGGTTCATCGAT

miRNA*
CGATAAACCTCTGCATCCAGC

mismatches: 3
bulges: 0

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pre-miRNA
GGTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAAACCTCTGCATCCA
GC
GCCTTAAC


dot-bracket secondary structure
.((.(((...(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)))).)))).))))
).
..))).))



SIMILARITIES
miRBase ghr-MIR162a: 6e-58

PMRD ghr-miR162a: 6e-58

microPC miR162: 1e-46
UniProt no hits

RFAM MIR162_2: 7e-21
most similar mature miRNAs

Identical with: miR162 from microPC (MNEST045545)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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