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ABOUT THIS RECORD

ID: MNEST000782
species: Gossypium hirsutum
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCGGTTCAATAAAGCTGTGG

miRNA*
 ACAGCTTTCTTGAACTGCAAT

mismatches: 1
bulges: 0
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pre-miRNA
 AACATGGCTCTCTTCGTATTCTTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCGTTGTCGTTGATGGTGCTGCATATATA
CGAGTACGTTGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAACAGGGTCAAA

dot-bracket secondary structure
)...(((((((.((.(((((.((((((((((((.((((((((((((...(((((.((...............(((((......))))).............
.)).))))).)))))))))))).)))))))))))).))))).)).)))))))..


SIMILARITIES
miRBase ghr-MIR396a: 3.0E-73

PMRD ghr-miR396b: 1.0E-60

microPC miR396: 1.0E-60		UniProt no hits

RFAM 6MIR396: 2.0E-13		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST045555), ghr-miR396b from PMRD , ghr-MIR396a from miRBase , miR396 from microPC

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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