miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000783
species: Gossypium hirsutum
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 GTTCAATAAAGCTGTGGGAAG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 GAACATGGCTCTCTTCGTATTCTTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCGTTGTCGTTGATGGTGCTGCATATAT
ACGAGTACGTTGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAACAGGGTCAAAG

dot-bracket secondary structure
)....(((((((.((.(((((.((((((((((((.((((((((((((...(((((.((...............(((((......)))))............
..)).))))).)))))))))))).)))))))))))).))))).)).)))))))...


SIMILARITIES
miRBase ghr-MIR396a: 3.0E-73

PMRD ghr-miR396b: 1.0E-60

microPC miR396: 1.0E-60		UniProt no hits

RFAM 6MIR396: 2.0E-13		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST045555), ghr-miR396b from PMRD , ghr-MIR396a from miRBase , miR396 from microPC

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;