ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGAGCCGAATCAATATCACTC miRNA* CGTGATATTGGTTCGGCTCATC mismatches: 1 bulges: 1 |
pre-miRNA
GAAAACCTCTGAATATATATTTGTGGGAGGAGTAGACACGACGTGATATTGGTTCGGCTCATCTTATTGTGATTAAAAATTTCAAGGCGAGCCGAATCAA
TATCACTCATGTATGCTTTTTTATTATTATTATCGGTTTAAAAAAAA
dot-bracket secondary structure
..(((((....((((......((..(((((((((.(((.((.((((((((((((((((((.(((...((.((((...)))).))))).))))))))))))
)))))))).))).)))))))))..)).))))...)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAAACCTCTGAATATATATTTGTGGGAGGAGTAGACACGACGTGATATTGGTTCGGCTCATCTTATTGTGATTAAAAATTTCAAGGCGAGCCGAATCAA
TATCACTCATGTATGCTTTTTTATTATTATTATCGGTTTAAAAAAAA
dot-bracket secondary structure
..(((((....((((......((..(((((((((.(((.((.((((((((((((((((((.(((...((.((((...)))).))))).))))))))))))
)))))))).))).)))))))))..)).))))...)))))........
SIMILARITIES| miRBase ghr-MIR479: 5e-50 PMRD ptc-miR171l: 0.00000003 microPC miR171: 0.0001 | UniProt no hits RFAM MIR171_2: 0.000000009 | most similar mature miRNAs |
Identical with: ghr-MIR479 from miRBase (MNEST041064) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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