ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCTG miRNA* GGGCAACTCTCCTTAAGCAAA mismatches: 3 bulges: 0 |
pre-miRNA
AGATTTGGAGTTGAGGAATTACAGGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCCTGCCA
TTCACTCACACAATTA
dot-bracket secondary structure
)........((((((((((..((((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))))..)
))).)))).)).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGATTTGGAGTTGAGGAATTACAGGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCCTGCCA
TTCACTCACACAATTA
dot-bracket secondary structure
)........((((((((((..((((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))))..)
))).)))).)).....
SIMILARITIES| miRBase ghr-MIR399d: 1.0E-50 PMRD ghr-miR399b: 3.0E-38 microPC miR399: 3.0E-38 | UniProt no hits RFAM 9mir-399: 2.0E-15 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST045684), ghr-MIR399d from miRBase , miR399 from microPC , ghr-miR399b from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
