ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR2950
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTGTGCAGGGGGTGGAATA miRNA* TTCCATCTCTTGCACACTGGA mismatches: 1 bulges: 0 |
pre-miRNA
GTTTATGTTATATTCCATCTCTTGCACACTGGACTAGCCAGCTTTTTGTTGGCTTCAGCTTCAGGTTGGTGTGCAGGGGGTGGAATACATCATTGA
dot-bracket secondary structure
.((.(((...((((((((((((((((((((.((..(((((((.....))))))))).(((...))).))))))))))))))))))))...))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTTATGTTATATTCCATCTCTTGCACACTGGACTAGCCAGCTTTTTGTTGGCTTCAGCTTCAGGTTGGTGTGCAGGGGGTGGAATACATCATTGA
dot-bracket secondary structure
.((.(((...((((((((((((((((((((.((..(((((((.....))))))))).(((...))).))))))))))))))))))))...))).))
SIMILARITIES| miRBase ghr-MIR2950: 1e-49 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ghr-MIR2950 from miRBase (MNEST041074) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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