ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIRf968
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGTTAAGCTCAGGAGGGATA miRNA* TCCATCCTGAGTTTCATCGGT mismatches: 3 bulges: 0 |
pre-miRNA
TCCAGTATGGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCG
CTATCCATCCTGAGTTTCATCGGTTCTTCTTGCTTGC
dot-bracket secondary structure
...((((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).)))
)))))).)))))))))).)).)))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCAGTATGGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCG
CTATCCATCCTGAGTTTCATCGGTTCTTCTTGCTTGC
dot-bracket secondary structure
...((((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).)))
)))))).)))))))))).)).)))))))))))))...
SIMILARITIES| miRBase ghr-MIR390b: 6e-71 PMRD ghr-miR390b: 6e-71 microPC miR390: 5e-50 | UniProt no hits RFAM MIR390: 0.000000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
