ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR827
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAACAAACA miRNA* TTTGTTTATGGTCATCTAAGC mismatches: 1 bulges: 0 |
pre-miRNA
TTGTTGAATGTGTTTGTTTATGGTCATCTAAGCCATTTTTCATCTCGCCAATTCTTTGTTCAAGCAGTTTTTGGATAATCGAACCGATAGACTACACCCG
CAGAAATGATGTTTAGATGACCATCAACAAACAACTTCCTCT
dot-bracket secondary structure
.....(((..((((((((.((((((((((((((......((((.((((....((((((((((((.....)))))))))(((...))).)))........)
).)).)))).)))))))))))))).))))))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGTTGAATGTGTTTGTTTATGGTCATCTAAGCCATTTTTCATCTCGCCAATTCTTTGTTCAAGCAGTTTTTGGATAATCGAACCGATAGACTACACCCG
CAGAAATGATGTTTAGATGACCATCAACAAACAACTTCCTCT
dot-bracket secondary structure
.....(((..((((((((.((((((((((((((......((((.((((....((((((((((((.....)))))))))(((...))).)))........)
).)).)))).)))))))))))))).))))))))..)))....
SIMILARITIES| miRBase ghr-MIR827c: 7e-77 PMRD ath-miR827: 0.00003 microPC miR827: 6e-62 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ghr-MIR827c from miRBase (MNEST041069) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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