ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR394
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTGGGCATACTGCCAACTG miRNA* TTGGCATTCTGTCCACCTCC mismatches: 3 bulges: 1 |
pre-miRNA
ATTTTTAGTTTGCTTTCATGGGGGTTTAGCAAAGGGCTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCCATCATGGAAAAAGTCCGTATTTTTCC
CCTCTGGTTTTTCATGGAGGTGGGCATACTGCCAACTGTGCTCTGTTGGCTTCTCTTTGTAAAATCCTTGTGATGCATTTCTTCCAG
dot-bracket secondary structure
......((..(((..((((((((((((.((((((((...((.(((((((.((((((((...((((((((((((((....(((((((.......)))))))
....)))........)))))))))))...)))))).)).))))))).))...)))))))).)))))))))))).)))...)).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTTTTAGTTTGCTTTCATGGGGGTTTAGCAAAGGGCTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCCCATCATGGAAAAAGTCCGTATTTTTCC
CCTCTGGTTTTTCATGGAGGTGGGCATACTGCCAACTGTGCTCTGTTGGCTTCTCTTTGTAAAATCCTTGTGATGCATTTCTTCCAG
dot-bracket secondary structure
......((..(((..((((((((((((.((((((((...((.(((((((.((((((((...((((((((((((((....(((((((.......)))))))
....)))........)))))))))))...)))))).)).))))))).))...)))))))).)))))))))))).)))...)).....
SIMILARITIES| miRBase ghr-MIR394a: 1e-91 PMRD ptc-miRf10096-akr: 7e-16 microPC miR394: 0.000009 | UniProt no hits RFAM MIR394: 0.0000000002 | most similar mature miRNAs |
Identical with: ghr-MIR394a from miRBase (MNEST041055) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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