ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCCTACTCCACCCATGCC miRNA* GATGGGTGAGGGGGTAAGACA mismatches: 2 bulges: 1 |
pre-miRNA
AGACGATGGAGAAGGAGCTTAGGATTCTAGAAAGCTCGTGGGATGGGTGAGGGGGTAAGACAATGGACTGTTTCAGTCTTTTGGAAACAGAAATAAAGAA
GAAGGCTGGTTTATGTCTTGCCTACTCCACCCATGCCACTGGTTTCCTGGTGTTCCTCCTCCTCCTAAAGTCTCT
dot-bracket secondary structure
((((...((((.(((((....((((.((((.(((((.((((.(((((((((.((((((((((.(((((((((((..(((((((....)).....))))).
))))..))))))))))))))))).)).))))))).)))).))))).)))).))))))))).))))....))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGACGATGGAGAAGGAGCTTAGGATTCTAGAAAGCTCGTGGGATGGGTGAGGGGGTAAGACAATGGACTGTTTCAGTCTTTTGGAAACAGAAATAAAGAA
GAAGGCTGGTTTATGTCTTGCCTACTCCACCCATGCCACTGGTTTCCTGGTGTTCCTCCTCCTCCTAAAGTCTCT
dot-bracket secondary structure
((((...((((.(((((....((((.((((.(((((.((((.(((((((((.((((((((((.(((((((((((..(((((((....)).....))))).
))))..))))))))))))))))).)).))))))).)))).))))).)))).))))))))).))))....))))..
SIMILARITIES| miRBase ghr-MIR482b: 2e-96 PMRD ghr-miR472: 2e-50 microPC miR482: 6e-47 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR482 from microPC (MNEST045159) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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