ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCTTCT miRNA* GAGGTGGTGGTGGTTCTGAAA mismatches: 2 bulges: 0 |
pre-miRNA
TTCCAATGCAAGGAGGTGGTGGTGGTTCTGAAAGTGGGTCTATGTCTACAGTTTCAAGGGAGGACAACATGGTGATGTCCTCTGAGGATTCTTCATGCCC
TGATGAGTCTGAGTTGGAGTTGGGTCTTGGTTTGAGCCTTGGTGGTTTTAAGATGCACCAAGTCTCAAGAGGTGGTCATTATGCTAGGATTTTGACTGCT
AAGGATTTCCCTTCTGTCATTTCTGCTTCTTCATCACCTTCATCATCATCATCATCATCTTCTTCTTCTTCT
dot-bracket secondary structure
.........(((((((((((((((((..(((..(((((......)))))..((((((.((((((((.((...)).))))))))..((((((.(((.....
))).))))))...))))))(((((.((((((..(((((.....)))))........)))))).)))))((((((((......((.((((...((((....
((((.....))))..)))).))))))......))))))))..)))..)))))))))))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
TTCCAATGCAAGGAGGTGGTGGTGGTTCTGAAAGTGGGTCTATGTCTACAGTTTCAAGGGAGGACAACATGGTGATGTCCTCTGAGGATTCTTCATGCCC
TGATGAGTCTGAGTTGGAGTTGGGTCTTGGTTTGAGCCTTGGTGGTTTTAAGATGCACCAAGTCTCAAGAGGTGGTCATTATGCTAGGATTTTGACTGCT
AAGGATTTCCCTTCTGTCATTTCTGCTTCTTCATCACCTTCATCATCATCATCATCATCTTCTTCTTCTTCT
dot-bracket secondary structure
.........(((((((((((((((((..(((..(((((......)))))..((((((.((((((((.((...)).))))))))..((((((.(((.....
))).))))))...))))))(((((.((((((..(((((.....)))))........)))))).)))))((((((((......((.((((...((((....
((((.....))))..)))).))))))......))))))))..)))..)))))))))))))))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
