ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR2911
source: miRNEST
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCCGGGGGACGGACTGGGAA miRNA* CCCAGTCCCGAACCCGTCGG mismatches: 5 bulges: 1 |
pre-miRNA
TCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGCCGGCGCACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCC
GGGGGACGGACTGGGAACGGCTCCCTCGGGGGCCTT
dot-bracket secondary structure
((((((((...(((.((....(((((((((....((((((((((((.((((..((((((..(((((....)))))..))))))..))))))).))))).)
)))....))))))))).)))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGCCGGCGCACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCC
GGGGGACGGACTGGGAACGGCTCCCTCGGGGGCCTT
dot-bracket secondary structure
((((((((...(((.((....(((((((((....((((((((((((.((((..((((((..(((((....)))))..))))))..))))))).))))).)
)))....))))))))).)))))))))))))......
SIMILARITIES| miRBase peu-MIR2911: 2e-34 PMRD peu-miR2911: 2e-34 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
