ABOUT THIS RECORDspecies: Guizotia abyssinica
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Guizotia abyssinica Guizotia Millerieae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGGTTCAATAAAGCTGTGG miRNA* ACGGCTTTCTTGAACTGCATG mismatches: 1 bulges: 0 |
pre-miRNA
CTGCCATAAAAATGGTTCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGGTTTGATCTACCAGATCTGCGTTTTTATATGCAATCTTTGCGGT
TCAATAAAGCTGTGGGAAGATAGAGACAGAATCAAAACCAGAAGA
dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((.(((....(((((...)))))(((((......))))).))).))))))
)))).)))))))))))).)))))))).)))))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGCCATAAAAATGGTTCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGGTTTGATCTACCAGATCTGCGTTTTTATATGCAATCTTTGCGGT
TCAATAAAGCTGTGGGAAGATAGAGACAGAATCAAAACCAGAAGA
dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((.(((....(((((...)))))(((((......))))).))).))))))
)))).)))))))))))).)))))))).)))))))...........
SIMILARITIES| miRBase aly-MIR396a: 0.00000000003 PMRD ath-miRf11010-akr: 0.000000000002 microPC miR396: 2e-30 | UniProt no hits RFAM MIR396: 0.0000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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