ABOUT THIS RECORDspecies: Helianthus argophyllus
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Helianthus argophyllus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCTGTCAGGG mismatches: 0 bulges: 2 |
pre-miRNA
TTGGTTGAGAACTGACAGAAGAGAGTGAGCACTCGCCGGCAACCGTATATAGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTC
AGGGTCCTATT
dot-bracket secondary structure
).......((.(((((((((((((((((((((.(((......(((.....((((......))))...)))......))).)))))))).)))).)))))))
))..)).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGTTGAGAACTGACAGAAGAGAGTGAGCACTCGCCGGCAACCGTATATAGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTC
AGGGTCCTATT
dot-bracket secondary structure
).......((.(((((((((((((((((((((.(((......(((.....((((......))))...)))......))).)))))))).)))).)))))))
))..)).....
SIMILARITIES| miRBase osa-MIR156l: 1.0E-6 PMRD vvi-miR156b: 1.0E-6 microPC miR156: 6.0E-46 | UniProt no hits RFAM 6mir-156: 2.0E-5 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST046709) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
