ABOUT THIS RECORDspecies: Helianthus ciliaris
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Helianthus ciliaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCTTCTTCTTCCTCTTCCA miRNA* TGACAGGAATGGGTGTGGAGACC mismatches: 4 bulges: 2 |
pre-miRNA
CTGCATGTCCGTCTCTTCTTCTTCCTCTTCCAATTCCAATTCTCTCTTCTCTTCCAAACGCAAACGCAGGCTCGATCGATTTTCACTTTCCTCCAGATGC
AGGCGAGGTCGCGTAACAATGGCTATAGCCTTTCAACCTTCTTCAATTGAAATGGAGGAGGAGACAACCCTCACCAAAAGGAAGCAGCCGCCTACAAAAC
AAAGGTGAGTTGTTGTGACAGGAATGGGTGTGGAGACCCCAATCGG
dot-bracket secondary structure
..........((((((.(((.(((((.((.((.((((.......((((((((((((.((((...(((..((((......................)).))
..))).....))))......(((....))).(((((..........))))).))))))))))))...............))))((((((((((.......
..))))).))))))).)).))))).)))...)))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTGCATGTCCGTCTCTTCTTCTTCCTCTTCCAATTCCAATTCTCTCTTCTCTTCCAAACGCAAACGCAGGCTCGATCGATTTTCACTTTCCTCCAGATGC
AGGCGAGGTCGCGTAACAATGGCTATAGCCTTTCAACCTTCTTCAATTGAAATGGAGGAGGAGACAACCCTCACCAAAAGGAAGCAGCCGCCTACAAAAC
AAAGGTGAGTTGTTGTGACAGGAATGGGTGTGGAGACCCCAATCGG
dot-bracket secondary structure
..........((((((.(((.(((((.((.((.((((.......((((((((((((.((((...(((..((((......................)).))
..))).....))))......(((....))).(((((..........))))).))))))))))))...............))))((((((((((.......
..))))).))))))).)).))))).)))...)))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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