ABOUT THIS RECORDspecies: Helianthus paradoxus
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Helianthus paradoxus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATGTTGGTTCGGTTCAATA mismatches: 2 bulges: 0 |
pre-miRNA
GTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAACGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCACGTGCAT
dot-bracket secondary structure
..((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))).))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAACGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCACGTGCAT
dot-bracket secondary structure
..((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))).))).)).
SIMILARITIES| miRBase rco-MIR171a: 0.0000000000003 PMRD vvi-miR171c: 0.0000000003 microPC miR171: 3e-41 | UniProt no hits RFAM MIR171_1: 0.000000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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