ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCATGATCTATCTGTCAGC mismatches: 3 bulges: 1 |
pre-miRNA
GGGAGTGATAAGAGATAGAGTTGACAGAAGAGAGTGAGCACACAAAGGCAAATTGTACCAATTTGTGTTGTATGATTGTTTTGGGTGCTCATGATCTATC
TGTCAGCTTCTTCTTACTCTATTTC
dot-bracket secondary structure
.(((((((.((((.....(((((((((((((..((((((((.(((((...((((((((((.....))..)))))))).))))).))))))))..))).))
)))))))))))).))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGAGTGATAAGAGATAGAGTTGACAGAAGAGAGTGAGCACACAAAGGCAAATTGTACCAATTTGTGTTGTATGATTGTTTTGGGTGCTCATGATCTATC
TGTCAGCTTCTTCTTACTCTATTTC
dot-bracket secondary structure
.(((((((.((((.....(((((((((((((..((((((((.(((((...((((((((((.....))..)))))))).))))).))))))))..))).))
)))))))))))).))))))).....
SIMILARITIES| miRBase ath-MIR156d: 0.0000000004 PMRD ath-miRf10567-akr: 0.0000000004 microPC miR156: 2e-42 | UniProt no hits RFAM mir-156: 0.000000007 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045065) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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