ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCATGATCTATCTGTCAGC mismatches: 3 bulges: 1 |
pre-miRNA
CGGGAGTGATAAGAGATAGAGTTGACAGAAGAGAGTGAGCACACAAAGGCAAATTGTACCAATTTGTGTTGTATGATTGTTTTGGGTGCTCATGATCTATC
TGTCAGCTTCTTCTTACTCTATTTC
dot-bracket secondary structure
).(((((((.((((.....(((((((((((((..((((((((.(((((...((((((((((.....))..)))))))).))))).))))))))..))).))
)))))))))))).))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CGGGAGTGATAAGAGATAGAGTTGACAGAAGAGAGTGAGCACACAAAGGCAAATTGTACCAATTTGTGTTGTATGATTGTTTTGGGTGCTCATGATCTATC
TGTCAGCTTCTTCTTACTCTATTTC
dot-bracket secondary structure
).(((((((.((((.....(((((((((((((..((((((((.(((((...((((((((((.....))..)))))))).))))).))))))))..))).))
)))))))))))).))))))).....
SIMILARITIES| miRBase ath-MIR156d: 4.0E-10 PMRD ath-miRf10567-akr: 4.0E-10 microPC miR156: 2.0E-42 | UniProt no hits RFAM 6mir-156: 7.0E-9 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045065) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
