ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTAAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
GTGGGATGAAGTAGAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTA
TAGGCTTTGTGGCTTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTCTACACCATCATA
dot-bracket secondary structure
....((((..((((((((((((..(((((((.(((.((((((((.(((...((((((((...(((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).)))...))))))))....))))))).)))).))).)))))))..))))))))))))..))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGGGATGAAGTAGAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTA
TAGGCTTTGTGGCTTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTCTACACCATCATA
dot-bracket secondary structure
....((((..((((((((((((..(((((((.(((.((((((((.(((...((((((((...(((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).)))...))))))))....))))))).)))).))).)))))))..))))))))))))..))))...
SIMILARITIES| miRBase vvi-MIR159c: 0.000000002 PMRD vvi-miR159c: 0.000000002 microPC miR159: 2e-90 | UniProt no hits RFAM MIR159: 0.00000005 | most similar mature miRNAs |
Identical with: miR159 from microPC (MNEST045888) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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