ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCATGCGATCTCTTCGGAAG mismatches: 1 bulges: 1 |
pre-miRNA
GCAGCGGGTTGAAGCTTCCAAAGGGATCGCATTGATCCATCTGTCCACTCGGATTTCAATCTCAGTTGATAATTTGGATCATGCGATCTCTTCGGAAGCTT
CCTCCATCG
dot-bracket secondary structure
)....(((..(((((((((.((((((((((((.((((((..((((.(((.((((....)))).))).))))...)))))))))))))))))).))))))))
).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAGCGGGTTGAAGCTTCCAAAGGGATCGCATTGATCCATCTGTCCACTCGGATTTCAATCTCAGTTGATAATTTGGATCATGCGATCTCTTCGGAAGCTT
CCTCCATCG
dot-bracket secondary structure
)....(((..(((((((((.((((((((((((.((((((..((((.(((.((((....)))).))).))))...)))))))))))))))))).))))))))
).)))....
SIMILARITIES| miRBase zma-MIR393b: 3.0E-7 PMRD zma-miR393f: 3.0E-7 microPC miR393: 5.0E-40 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR393 from microPC (MNEST044833) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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