ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAATACAAAGTTGAGTCATTT miRNA* ATGACTTAATTTTATATTAAA mismatches: 2 bulges: 0 |
pre-miRNA
TCTACCAATATACTCCCTCCGTTCCGAAATAAGTGACTCAAAAATGACTTAATTTTATATTAAATTAAATACAAAGTTGAGTCATTTTTGAGTTACTTATT
TTTGGATGGAGGGAGTAACACAGTT
dot-bracket secondary structure
).........((((((((((((((.(((((((((((((((((((((((((((((((.((((......)))).)))))))))))))))))))))))))))))
)).))))))))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TCTACCAATATACTCCCTCCGTTCCGAAATAAGTGACTCAAAAATGACTTAATTTTATATTAAATTAAATACAAAGTTGAGTCATTTTTGAGTTACTTATT
TTTGGATGGAGGGAGTAACACAGTT
dot-bracket secondary structure
).........((((((((((((((.(((((((((((((((((((((((((((((((.((((......)))).)))))))))))))))))))))))))))))
)).))))))))))))))........
SIMILARITIES| miRBase osa-MIR812i: 2.0E-5 PMRD hpr-miR1120: 2.0E-6 microPC miR1439: 2.0E-6 | UniProt no hits RFAM 2MIR1122: 5.0E-19 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
