miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000943
species: Hordeum vulgare
miRNA family: MIR1132
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATTATGGAACGGAGGGAGTA

miRNA*
 CTTCCTCCGTTTCTAAATATA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ATATATATAGTACTTCCTCCGTTTCTAAATATAAGTCTTTTAAGCGATTTCTCTAAAGGACTACATACAAAGCAAAATGAGTGAATCTACACTCTAAAGT
ATGTCTATATACATCCGTATGTAGTCCTCTAGTGGAATCTCTAAAAAGACTTATATTATGGAACGGAGGGAGTAAACACAGTG

dot-bracket secondary structure
..........(((((((((((((((..((((((((((((((.((.((((((.(((.((((((((((((...((.....(((((......)))))....))
((((......))))..)))))))))))).))).)))))).)).))))))))))))))..))))))))))))))).........


SIMILARITIES
miRBase tae-MIR1122: 8e-34

PMRD tae-miR1122: 8e-34

microPC miR1436: 1e-88		UniProt no hits

RFAM MIR1122: 2e-50		most similar mature miRNAs

Identical with: miR1436 from microPC (MNEST045994)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;