ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1132
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTATGGAACGGAGGGAGTA miRNA* CTTCCTCCGTTTCTAAATATA mismatches: 2 bulges: 0 |
pre-miRNA
GATATATATAGTACTTCCTCCGTTTCTAAATATAAGTCTTTTAAGCGATTTCTCTAAAGGACTACATACAAAGCAAAATGAGTGAATCTACACTCTAAAGT
ATGTCTATATACATCCGTATGTAGTCCTCTAGTGGAATCTCTAAAAAGACTTATATTATGGAACGGAGGGAGTAAACACAGTG
dot-bracket secondary structure
)..........(((((((((((((((..((((((((((((((.((.((((((.(((.((((((((((((...((.....(((((......)))))....))
((((......))))..)))))))))))).))).)))))).)).))))))))))))))..))))))))))))))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATATATATAGTACTTCCTCCGTTTCTAAATATAAGTCTTTTAAGCGATTTCTCTAAAGGACTACATACAAAGCAAAATGAGTGAATCTACACTCTAAAGT
ATGTCTATATACATCCGTATGTAGTCCTCTAGTGGAATCTCTAAAAAGACTTATATTATGGAACGGAGGGAGTAAACACAGTG
dot-bracket secondary structure
)..........(((((((((((((((..((((((((((((((.((.((((((.(((.((((((((((((...((.....(((((......)))))....))
((((......))))..)))))))))))).))).)))))).)).))))))))))))))..))))))))))))))).........
SIMILARITIES| miRBase tae-MIR1122: 8.0E-34 PMRD tae-miR1122: 8.0E-34 microPC miR1436: 1.0E-88 | UniProt no hits RFAM 2MIR1122: 2.0E-50 | most similar mature miRNAs |
Identical with: miR1436 from microPC (MNEST045994) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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