ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCAGTCCCAAAATAAGTGT miRNA* ACTTATTTTGGNACANANGGA mismatches: 5 bulges: 0 |
pre-miRNA
TATCAATTTTGTTTCATAATCCCTCAGTCCCAAAATAAGTGTCTTAACTCTAGTACAATTTTGTACTAAAGTTAGTACAAACTTGAAACACTTATTTTGG
NACANANGGAGTATGAANTACTCTGACT
dot-bracket secondary structure
.........((.((((((.(((....((.(((((((((((((.((((((.(((((((....))))))).))))))..((....))..)))))))))))))
.))....))).)))))).))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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TATCAATTTTGTTTCATAATCCCTCAGTCCCAAAATAAGTGTCTTAACTCTAGTACAATTTTGTACTAAAGTTAGTACAAACTTGAAACACTTATTTTGG
NACANANGGAGTATGAANTACTCTGACT
dot-bracket secondary structure
.........((.((((((.(((....((.(((((((((((((.((((((.(((((((....))))))).))))))..((....))..)))))))))))))
.))....))).)))))).))........
SIMILARITIES| miRBase tae-MIR1137: 0.000006 PMRD tae-miR1137: 0.000006 microPC miR1439: 0.00000000003 | UniProt no hits RFAM MIR1122: 2e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
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