ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTAAACTAATATAAGAT miRNA* CTTATATTAGTTTACAGAGGG mismatches: 2 bulges: 0 |
pre-miRNA
TTCAGTATTTCGTAGGTGAGGGACTCTTTATCATGTACTCCCTCCGTAAACTAATATAAGATCGTTTAGATCACTACTTTAGTGATCTAAACACTCTTAT
ATTAGTTTACAGAGGGAGTAACAACAAAGGATTGCCTTTGAATTGCATTTCCTC
dot-bracket secondary structure
....(((.((((.((((((.....(((((......(((((((((.((((((((((((((((..(((((((((((((...)))))))))))))..))))))
)))))))))).))))))))).....))))).)))))).)))).)))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCAGTATTTCGTAGGTGAGGGACTCTTTATCATGTACTCCCTCCGTAAACTAATATAAGATCGTTTAGATCACTACTTTAGTGATCTAAACACTCTTAT
ATTAGTTTACAGAGGGAGTAACAACAAAGGATTGCCTTTGAATTGCATTTCCTC
dot-bracket secondary structure
....(((.((((.((((((.....(((((......(((((((((.((((((((((((((((..(((((((((((((...)))))))))))))..))))))
)))))))))).))))))))).....))))).)))))).)))).)))........
SIMILARITIES| miRBase tae-MIR1121: 1e-26 PMRD tmo-miR1120: 1e-26 microPC miR1121: 0.000000000008 | UniProt no hits RFAM MIR1122: 3e-30 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
