ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTAAACTAATATAAGNA miRNA* TTTATATTAGTTTACAGAGGG mismatches: 3 bulges: 0 |
pre-miRNA
TAGAAAGAAAGATAATACTCCCTCCGTAAACTAATATAAGNAGATTTAGGACACTACTTTAATAATCTAAACGTTTTTATATTAGTTTACAGAGGGAGTG
CTCGTTGGTCCCGG
dot-bracket secondary structure
..((..((..((...(((((((((.(((((((((((((((..(.((((((...............))))))..).))))))))))))))).)))))))))
.)).))..))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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TAGAAAGAAAGATAATACTCCCTCCGTAAACTAATATAAGNAGATTTAGGACACTACTTTAATAATCTAAACGTTTTTATATTAGTTTACAGAGGGAGTG
CTCGTTGGTCCCGG
dot-bracket secondary structure
..((..((..((...(((((((((.(((((((((((((((..(.((((((...............))))))..).))))))))))))))).)))))))))
.)).))..))....
SIMILARITIES| miRBase no hits PMRD tmo-miR1120: 0.0000000000004 microPC no hits | UniProt no hits RFAM MIR1122: 1e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
