ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTGTAAACTAATATAAAAG miRNA* TATATTAATTTACAGAGGA mismatches: 2 bulges: 2 |
pre-miRNA
GATTTTTCTGCCTTCTGCTCCCTCTGTAAACTAATATAAAAGAGCTTAGATTACTAGAGTAGGGTTTTAAATGCTCTTATATTAATTTACAGAGGAGTAC
AAAACATTAACAGA
dot-bracket secondary structure
............((.((((((.((((((((.(((((((..(((((.......(((.......))).......)))))))))))).)))))))))))))).
))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATTTTTCTGCCTTCTGCTCCCTCTGTAAACTAATATAAAAGAGCTTAGATTACTAGAGTAGGGTTTTAAATGCTCTTATATTAATTTACAGAGGAGTAC
AAAACATTAACAGA
dot-bracket secondary structure
............((.((((((.((((((((.(((((((..(((((.......(((.......))).......)))))))))))).)))))))))))))).
))............
SIMILARITIES| miRBase no hits PMRD tmo-miR1120: 0.0000004 microPC no hits | UniProt no hits RFAM MIR1122: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
