ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCCGTCCTAAAAT miRNA* TTTAAGACGGAGAAAGTATTA mismatches: 3 bulges: 0 |
pre-miRNA
ACTTCGCTTCTAGTAACAGATACTCCCTCCGTCCTAAAATTCTCGTCTTAGATTTGTCTAGATATGAATATCAAGTATTTAGATACATTTATTTCTAGAT
AAACCTAATACAAGAATTTTAAGACGGAGAAAGTATTATATTTTATAGCAGT
dot-bracket secondary structure
.....(((...((((...((((((..(((((((.(((((((((.((.((((.((((((((((.(((((((((.........))))..))))).)))))))
))).)))).)).))))))))).)))))))..)))))).))))....)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTTCGCTTCTAGTAACAGATACTCCCTCCGTCCTAAAATTCTCGTCTTAGATTTGTCTAGATATGAATATCAAGTATTTAGATACATTTATTTCTAGAT
AAACCTAATACAAGAATTTTAAGACGGAGAAAGTATTATATTTTATAGCAGT
dot-bracket secondary structure
.....(((...((((...((((((..(((((((.(((((((((.((.((((.((((((((((.(((((((((.........))))..))))).)))))))
))).)))).)).))))))))).)))))))..)))))).))))....)))...
SIMILARITIES| miRBase tae-MIR1122: 0.000000000008 PMRD hpi-miR1122: 0.000000000000002 microPC miR1127: 0.0005 | UniProt no hits RFAM MIR1122: 4e-57 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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