ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCTCTCCGTCCCAGAAT miRNA* TTTGGGGACGGGGGGGAGTATAT mismatches: 1 bulges: 2 |
pre-miRNA
GTCCTAAACTTATACTCTCTCCGTCCCAGAATNCTTGTCTTAGATTTGGCTACATATAAATGTATTCTATCACGTTTGGGTATTTAGAATCCATCACTTT
TAAAACAACCCTAAAACCAAAATTTTGGGGACGGGGGGGAGTATATGATTGGAA
dot-bracket secondary structure
.(((......((((((((((((.(((((((((..(((.....(((..((.(((((....))))).)).)))..((((((((.(((((((........)))
))))...))))..))))))).)))))))))...)))))))))))).....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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GTCCTAAACTTATACTCTCTCCGTCCCAGAATNCTTGTCTTAGATTTGGCTACATATAAATGTATTCTATCACGTTTGGGTATTTAGAATCCATCACTTT
TAAAACAACCCTAAAACCAAAATTTTGGGGACGGGGGGGAGTATATGATTGGAA
dot-bracket secondary structure
.(((......((((((((((((.(((((((((..(((.....(((..((.(((((....))))).)).)))..((((((((.(((((((........)))
))))...))))..))))))).)))))))))...)))))))))))).....))).
SIMILARITIES| miRBase tae-MIR1122: 0.000000008 PMRD tae-miR1122: 0.000000008 microPC no hits | UniProt no hits RFAM MIR1122: 0.000000009 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record
