ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGAACGGAGGGAGTATA miRNA* TACTCCCTCTGTCCCAAAATA mismatches: 1 bulges: 0 |
pre-miRNA
TATAAAGATATACTCCCTCTGTCCCAAAATAAGTGACGCAAATTTAGTATTAAGTTAGTACAAATTTTATAGTAAAGCAGCGACACTTATTTTGGAACGG
AGGGAGTATATAGCAAT
dot-bracket secondary structure
.......(((((((((((((((.((((((((((((.(((...((((.(((.(((((......))))).))).))))...))).)))))))))))).))))
)))))))))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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TATAAAGATATACTCCCTCTGTCCCAAAATAAGTGACGCAAATTTAGTATTAAGTTAGTACAAATTTTATAGTAAAGCAGCGACACTTATTTTGGAACGG
AGGGAGTATATAGCAAT
dot-bracket secondary structure
.......(((((((((((((((.((((((((((((.(((...((((.(((.(((((......))))).))).))))...))).)))))))))))).))))
)))))))))))......
SIMILARITIES| miRBase osa-MIR1862d: 0.00002 PMRD hpr-miR1120: 0.0000000004 microPC miR1439: 0.00000002 | UniProt no hits RFAM MIR1122: 1e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
