ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR2033
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTTCTTTACAGAGGGAGTA miRNA* CTCCCTCCGTANACAATATA mismatches: 5 bulges: 1 |
pre-miRNA
GCAATCCTATGTACTCCCTCCGTANACAATATAAGAGCGTTTAGATACTAAAGTAATGATCTANACACTCTTATATTTCTTTACAGAGGGAGTANCATAT
ATAG
dot-bracket secondary structure
.......((((.((((((((.(((...((((((((((.((.(((((............))))).)).))))))))))....))).))))))))..)))).
....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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GCAATCCTATGTACTCCCTCCGTANACAATATAAGAGCGTTTAGATACTAAAGTAATGATCTANACACTCTTATATTTCTTTACAGAGGGAGTANCATAT
ATAG
dot-bracket secondary structure
.......((((.((((((((.(((...((((((((((.((.(((((............))))).)).))))))))))....))).))))))))..)))).
....
SIMILARITIES| miRBase tae-MIR1121: 0.00000000000002 PMRD tae-miR1121: 0.00000000000002 microPC miR1121: 0.00008 | UniProt no hits RFAM MIR1122: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record
