ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCTGTAAAGAAATAAAA miRNA* ATATTTGTTTATGGAGGGAGT mismatches: 2 bulges: 0 |
pre-miRNA
CTAATGGATATTAGTTAGTACTCCCTCTGTAAAGAAATAAAAGAGCGTTTAGATCACTAAAAAGTAGTTATCTAAATAATCTTATATTTGTTTATGGAGG
GAGTATCTAGTTATATGAGAGT
dot-bracket secondary structure
((.(((...(((((...((((((((((((((((.(((((.((((..((((((((.((((.....)))).))))))))..)))).))))).))))))))))
)))))))))))..))).))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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CTAATGGATATTAGTTAGTACTCCCTCTGTAAAGAAATAAAAGAGCGTTTAGATCACTAAAAAGTAGTTATCTAAATAATCTTATATTTGTTTATGGAGG
GAGTATCTAGTTATATGAGAGT
dot-bracket secondary structure
((.(((...(((((...((((((((((((((((.(((((.((((..((((((((.((((.....)))).))))))))..)))).))))).))))))))))
)))))))))))..))).))...
SIMILARITIES| miRBase tae-MIR1121: 0.00000000000003 PMRD ave-miR1120: 0.000000000000002 microPC miR1121: 0.00009 | UniProt no hits RFAM MIR1122: 8e-21 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
