ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGATCGGGAC miRNA* CCCGCCTTGCACCAAGTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
CTCCCCGCCCGTCCGTCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCTCCGCCCGCCCCGACGGGCCGGATCCCGCCTTGCACCAAGTGAATC
GGAGCCGGCGCAGCGACCACCACCACC
dot-bracket secondary structure
).............((((((((((.(((.((.(((((((((((((..(((((...((((((((......)))).)))))))))..))))))))))))).))
.))).)))))..)))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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CTCCCCGCCCGTCCGTCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCTCCGCCCGCCCCGACGGGCCGGATCCCGCCTTGCACCAAGTGAATC
GGAGCCGGCGCAGCGACCACCACCACC
dot-bracket secondary structure
).............((((((((((.(((.((.(((((((((((((..(((((...((((((((......)))).)))))))))..))))))))))))).))
.))).)))))..)))))..........
SIMILARITIES| miRBase hvu-MIR168: 2.0E-55 PMRD sof-miR168a: 1.0E-37 microPC miR168: 1.0E-19 | UniProt no hits RFAM 8MIR168: 4.0E-35 | most similar mature miRNAs |
Identical with: hvv-miR168 from PMRD (MNEST048661), hvu-MIR168 from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
