ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1135
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCGACAAGTAATTCCGAAT miRNA* CCGGAATATTTGTCACAAGA mismatches: 3 bulges: 1 |
pre-miRNA
ACAAACGAATACTCCCTCTGTCCGGAATATTTGTCACAAGAACAGATGTATCTAGATGTATTTTAGTTTTAAATACATCATTTTGTATCCATTTATGCGAC
AAGTAATTCCGAATTGAAAGGAGTACACGACCA
dot-bracket secondary structure
)....((..((((((.((.((.(((((((((((((.((.(((..((((((....(((((((((.......)))))))))....))))))..))).)).)))
)))).)))))).)).))..))))))..))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
ACAAACGAATACTCCCTCTGTCCGGAATATTTGTCACAAGAACAGATGTATCTAGATGTATTTTAGTTTTAAATACATCATTTTGTATCCATTTATGCGAC
AAGTAATTCCGAATTGAAAGGAGTACACGACCA
dot-bracket secondary structure
)....((..((((((.((.((.(((((((((((((.((.(((..((((((....(((((((((.......)))))))))....))))))..))).)).)))
)))).)))))).)).))..))))))..))....
SIMILARITIES| miRBase tae-MIR1136: 1.0E-10 PMRD ata-miR1122: 3.0E-11 microPC miR1128: 2.0E-12 | UniProt no hits RFAM 2MIR1122: 4.0E-20 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
