ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATACTTCCTCCGTCCCAAAA miRNA* TTGGAACAGGGGAAGTAGAAA mismatches: 4 bulges: 0 |
pre-miRNA
TGAGCAAAAATAATACTTCCTCCGTCCCAAAATAATTGTCTAGAGGCTTAGTACAATTTTATACTAAAGCTAGTACAAGGTTGAGACATTTATTTTGGAA
CAGGGGAAGTAGAAACAAGGCTA
dot-bracket secondary structure
..(((........(((((((((.((.(((((((((.(((((...(((((.((((..(((((...)))))...)))).))))).))))).))))))))).)
).)))))))))........))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
TGAGCAAAAATAATACTTCCTCCGTCCCAAAATAATTGTCTAGAGGCTTAGTACAATTTTATACTAAAGCTAGTACAAGGTTGAGACATTTATTTTGGAA
CAGGGGAAGTAGAAACAAGGCTA
dot-bracket secondary structure
..(((........(((((((((.((.(((((((((.(((((...(((((.((((..(((((...)))))...)))).))))).))))).))))))))).)
).)))))))))........))).
SIMILARITIES| miRBase osa-MIR1439: 0.0004 PMRD osa-miRf10180-akr: 0.00009 microPC miR1439: 2e-18 | UniProt no hits RFAM MIR1122: 5e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
