ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCGTCCCAAAATAATTGT miRNA* ATTTATTTTGGAACAGGGGAA mismatches: 3 bulges: 0 |
pre-miRNA
ATGAGCAAAAATAATACTTCCTCCGTCCCAAAATAATTGTCTAGAGGCTTAGTACAATTTTATACTAAAGCTAGTACAAGGTTGAGACATTTATTTTGGA
ACAGGGGAAGTAGAAACAAGGCTAC
dot-bracket secondary structure
...(((........(((((((((.((.(((((((((.(((((...(((((.((((..(((((...)))))...)))).))))).))))).))))))))).
)).)))))))))........)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATGAGCAAAAATAATACTTCCTCCGTCCCAAAATAATTGTCTAGAGGCTTAGTACAATTTTATACTAAAGCTAGTACAAGGTTGAGACATTTATTTTGGA
ACAGGGGAAGTAGAAACAAGGCTAC
dot-bracket secondary structure
...(((........(((((((((.((.(((((((((.(((((...(((((.((((..(((((...)))))...)))).))))).))))).))))))))).
)).)))))))))........)))..
SIMILARITIES| miRBase osa-MIR1439: 0.0004 PMRD osa-miRf10180-akr: 0.0001 microPC miR1439: 2e-18 | UniProt no hits RFAM MIR1122: 5e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
