ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCCGTCCCAAAATAAGTGA miRNA* ACATATTTCGGGGTCGAGGGA mismatches: 3 bulges: 0 |
pre-miRNA
GAAGAAGGGAACGCTTCATCTTTGTAGCTAATTATATACTCCTTCCGTCCCAAAATAAGTGAATCAAAAATGACTTAGTTTTTACTAAATTTAGTATAAA
GTTAAGTCACTTTTGATTCACATATTTCGGGGTCGAGGGAGTACTTCATAGCAACAATTTTGTAATTGTTCTAAATTC
dot-bracket secondary structure
...(((.((((((.((((...((((.((((......(((((((((.(((((.(((((.(((((((((((.(((((((((((.(((((....))))).)))
.)))))))).))))))))))).))))).))))).))))))))).....)))).))))...)).)).))))))...)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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GAAGAAGGGAACGCTTCATCTTTGTAGCTAATTATATACTCCTTCCGTCCCAAAATAAGTGAATCAAAAATGACTTAGTTTTTACTAAATTTAGTATAAA
GTTAAGTCACTTTTGATTCACATATTTCGGGGTCGAGGGAGTACTTCATAGCAACAATTTTGTAATTGTTCTAAATTC
dot-bracket secondary structure
...(((.((((((.((((...((((.((((......(((((((((.(((((.(((((.(((((((((((.(((((((((((.(((((....))))).)))
.)))))))).))))))))))).))))).))))).))))))))).....)))).))))...)).)).))))))...)))
SIMILARITIES| miRBase osa-MIR1862c: 0.0006 PMRD hpr-miR1120: 0.000002 microPC miR1439: 0.000009 | UniProt no hits RFAM MIR1122: 0.00000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
