ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGAACGGAGGGAGTATA miRNA* TACTCCCTCCGTCCGAAATT mismatches: 0 bulges: 1 |
pre-miRNA
ATATTAACTCATTTTGGAACGGAGGGAGTATAACATAAACTCTACTTACAACATAACCACAATTTATTATCATATACTCCCTCCGTCCGAAATTACTTAT
CG
dot-bracket secondary structure
..........((((((((.(((((((((((((..((((............................))))..))))))))))))))))))))).......
..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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ATATTAACTCATTTTGGAACGGAGGGAGTATAACATAAACTCTACTTACAACATAACCACAATTTATTATCATATACTCCCTCCGTCCGAAATTACTTAT
CG
dot-bracket secondary structure
..........((((((((.(((((((((((((..((((............................))))..))))))))))))))))))))).......
..
SIMILARITIES| miRBase tae-MIR1133: 0.000001 PMRD tae-miR1133: 0.000001 microPC miR1439: 0.00002 | UniProt no hits RFAM MIR1122: 0.00009 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
