ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCCATAATG miRNA* TTCTGGGACGAATGGAGTAGC mismatches: 4 bulges: 0 |
pre-miRNA
TCATTATCATATACTCCCTCCGTCCCATAATGTAAGACGTTTTTTGACACACATTCTGGGACGAATGGAGTAGCTAATATAT
dot-bracket secondary structure
...........((((((...(((((((.(((((.................))))).)))))))...))))))..........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATTATCATATACTCCCTCCGTCCCATAATGTAAGACGTTTTTTGACACACATTCTGGGACGAATGGAGTAGCTAATATAT
dot-bracket secondary structure
...........((((((...(((((((.(((((.................))))).)))))))...))))))..........
SIMILARITIES| miRBase tae-MIR1130: 0.00000002 PMRD tae-miR1130: 0.00000002 microPC miR1436: 0.000000000001 | UniProt no hits RFAM MIR1122: 0.00000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
