ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCCCAAAATAA miRNA* ATTTTGGGACGGAGGGAGTAT mismatches: 0 bulges: 0 |
pre-miRNA
GTCAACTGTGGTTACTGTATATGGTACTCCCTCCGTCCCAAAATAAGTCTCTTAAGCTTAGTATAACTTTGTACTAGCTCTAGTACAAAGTTGATACAGT
TATTTTGGGACGGAGGGAGTAT
dot-bracket secondary structure
....((((((.........))))))(((((((((((((((((((((((.......))...((((((((((((((((....)))))))))))).))))..)
))))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCAACTGTGGTTACTGTATATGGTACTCCCTCCGTCCCAAAATAAGTCTCTTAAGCTTAGTATAACTTTGTACTAGCTCTAGTACAAAGTTGATACAGT
TATTTTGGGACGGAGGGAGTAT
dot-bracket secondary structure
....((((((.........))))))(((((((((((((((((((((((.......))...((((((((((((((((....)))))))))))).))))..)
))))))))))))))))))))..
SIMILARITIES| miRBase osa-MIR1862c: 0.000002 PMRD hpr-miR1120: 0.0000001 microPC miR1439: 3e-51 | UniProt no hits RFAM MIR1122: 1e-32 | most similar mature miRNAs |
Identical with: miR1439 from microPC (MNEST045970) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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