ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCCCAAAATTC miRNA* TATTTGAGACGGAGGGAGTAC mismatches: 5 bulges: 0 |
pre-miRNA
TCTTAGTTTATACTCCCTCCGTCCCAAAATTCTTGTCTTAGGTTTGTGTAGAAATGAATGTATCTAAATAGCAAAACGTGACTAGATACATTTATATCAC
AAATCTAAGACAAAATATTTGAGACGGAGGGAGTACTAGTGAAA
dot-bracket secondary structure
(((((((....((((((((((((.((((....((((((((((((((((.....(((((((((((((....((.....))...)))))))))))))..)))
)))))))))))))....)))).))))))))))))))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTTAGTTTATACTCCCTCCGTCCCAAAATTCTTGTCTTAGGTTTGTGTAGAAATGAATGTATCTAAATAGCAAAACGTGACTAGATACATTTATATCAC
AAATCTAAGACAAAATATTTGAGACGGAGGGAGTACTAGTGAAA
dot-bracket secondary structure
(((((((....((((((((((((.((((....((((((((((((((((.....(((((((((((((....((.....))...)))))))))))))..)))
)))))))))))))....)))).))))))))))))))))).))..
SIMILARITIES| miRBase tae-MIR1122: 1e-16 PMRD tae-miR1122: 1e-16 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR1122: 7e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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