ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCGTCCCAAAATAATTGT miRNA* ATTTATTTTGAAACAGAGGAA mismatches: 4 bulges: 0 |
pre-miRNA
AAATAATACTCCCTCCGTCCCAAAATAATTGTCTTAGGTTTAGTACAATTTTATAATAGAGCTAGTACAAGGTTGAGACATTTATTTTGAAACAGAGGAA
GTAGAAAC
dot-bracket secondary structure
......((((.((((.((..((((((((.((((((((.(((.((((..(((((...)))))...))))))).)))))))).))))))))..)).)))).)
))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATAATACTCCCTCCGTCCCAAAATAATTGTCTTAGGTTTAGTACAATTTTATAATAGAGCTAGTACAAGGTTGAGACATTTATTTTGAAACAGAGGAA
GTAGAAAC
dot-bracket secondary structure
......((((.((((.((..((((((((.((((((((.(((.((((..(((((...)))))...))))))).)))))))).))))))))..)).)))).)
))).....
SIMILARITIES| miRBase tae-MIR1122: 0.000001 PMRD tae-miR1122: 0.000001 microPC miR1439: 7e-24 | UniProt no hits RFAM MIR1122: 3e-23 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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