ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTTCCAAAATA miRNA* TTTTGGGACGGAGGGAGTACT mismatches: 0 bulges: 0 |
pre-miRNA
CCACTAAATTATACTCCCTCCGTTCCAAAATAACTGTCTCAACTTTATACTATATCTAGTATAAATTTATACTAAGCTTAGGACAGTTATTTTGGGACGG
AGGGAGTACTAGAAAATG
dot-bracket secondary structure
...........((((((((((((((((((((((((((((.((.(((((((((....)))))))))((((...)))).)).))))))))))))))))))))
))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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CCACTAAATTATACTCCCTCCGTTCCAAAATAACTGTCTCAACTTTATACTATATCTAGTATAAATTTATACTAAGCTTAGGACAGTTATTTTGGGACGG
AGGGAGTACTAGAAAATG
dot-bracket secondary structure
...........((((((((((((((((((((((((((((.((.(((((((((....)))))))))((((...)))).)).))))))))))))))))))))
))))))))..........
SIMILARITIES| miRBase far-MIR1122: 0.000006 PMRD hpr-miR1120: 0.0000000004 microPC miR1439: 2e-27 | UniProt no hits RFAM MIR1122: 3e-42 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
