ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCGTCCCAAAATAAGTGT miRNA* ACTTATTTTGCGACGGAGGGA mismatches: 1 bulges: 0 |
pre-miRNA
CCTTAACATGCTACTCCCTCCGTCCCAAAATAAGTGTCTCAACTTTGTACTAGCTCTAGTACAAAGTTGTACTAAGCTTGAGACACTTATTTTGCGACGG
AGGGAGTATTGTTTTATT
dot-bracket secondary structure
....((((...(((((((((((((.(((((((((((((((((((((((((((....))))))))))).((.....)).)))))))))))))))).)))))
)))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTTAACATGCTACTCCCTCCGTCCCAAAATAAGTGTCTCAACTTTGTACTAGCTCTAGTACAAAGTTGTACTAAGCTTGAGACACTTATTTTGCGACGG
AGGGAGTATTGTTTTATT
dot-bracket secondary structure
....((((...(((((((((((((.(((((((((((((((((((((((((((....))))))))))).((.....)).)))))))))))))))).)))))
)))))))).)))).....
SIMILARITIES| miRBase far-MIR1122: 0.000000006 PMRD hpr-miR1120: 0.000000000006 microPC miR1439: 8e-36 | UniProt no hits RFAM MIR1122: 4e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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