ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTCGGACAGAGGGAGTATA miRNA* TACTCCCTCCGTCCCAAAATA mismatches: 3 bulges: 0 |
pre-miRNA
CCATCTGAAGTACTCCCTCCGTCCCAAAATAAGTGACTCGAAAGTGGCTCAACTTTGCACTAACTTTAGTGCAAAGTTGAGTAATTTTTAAGTCACTTAT
TTTCGGACAGAGGGAGTATATAATTAG
dot-bracket secondary structure
.........((((((((((.((((.(((((((((((((.((((((.((((((((((((((((....)))))))))))))))).)))))).))))))))))
))).)))).))))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCATCTGAAGTACTCCCTCCGTCCCAAAATAAGTGACTCGAAAGTGGCTCAACTTTGCACTAACTTTAGTGCAAAGTTGAGTAATTTTTAAGTCACTTAT
TTTCGGACAGAGGGAGTATATAATTAG
dot-bracket secondary structure
.........((((((((((.((((.(((((((((((((.((((((.((((((((((((((((....)))))))))))))))).)))))).))))))))))
))).)))).))))))))))........
SIMILARITIES| miRBase osa-MIR1862c: 0.000006 PMRD hpr-miR1120: 0.000000002 microPC miR1439: 0.000000002 | UniProt no hits RFAM MIR1122: 3e-33 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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