ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTACTCCCTCCGTTCCTAAA miRNA* TAGGAACGGAGGGCGTACATC mismatches: 3 bulges: 0 |
pre-miRNA
TAATAAACACTGAATAAATGGACTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAAAGGTTTCACTAATAGAGTACATACGGATGTATATAGACATACT
CTAGAGTGTACATTCAATCATTTTGCTTCGTATCTAAACCTTAGTGAAATCGTTTAACAGACTTATATTTAGGAACGGAGGGCGTACATCAGTAAAACGT
TACTCTAA
dot-bracket secondary structure
.......................(((.((((((((((((((((((((((((.((.((.(((((((((((.....((.(((((((((((((((((.....)
)))...))))))..............))))))).))....))))))))))).)).)).)))))))))))))))))))))))).)))....(((((....)
))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAATAAACACTGAATAAATGGACTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAAAGGTTTCACTAATAGAGTACATACGGATGTATATAGACATACT
CTAGAGTGTACATTCAATCATTTTGCTTCGTATCTAAACCTTAGTGAAATCGTTTAACAGACTTATATTTAGGAACGGAGGGCGTACATCAGTAAAACGT
TACTCTAA
dot-bracket secondary structure
.......................(((.((((((((((((((((((((((((.((.((.(((((((((((.....((.(((((((((((((((((.....)
)))...))))))..............))))))).))....))))))))))).)).)).)))))))))))))))))))))))).)))....(((((....)
))))....
SIMILARITIES| miRBase tae-MIR1122: 0.000000000000003 PMRD tae-miR1122: 0.000000000000003 microPC miR1436: 1e-33 | UniProt no hits RFAM MIR1122: 2e-53 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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