ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCTGTCCCAAAATAAGT miRNA* TTATTCTGGGACGAAGAGAGT mismatches: 3 bulges: 0 |
pre-miRNA
TTTCATCTAACTCCCTCTGTCCCAAAATAAGTGTCACTGATCTATTATAAATTTTGTACTAATTTAATACTAAATCTGCGACACTTATTCTGGGACGAAG
AGAGTATAATGTT
dot-bracket secondary structure
.........((((.((.(((((((.((((((((((...(((.((.((((((((.......))))).))).)).)))...)))))))))).))))))).))
.))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTCATCTAACTCCCTCTGTCCCAAAATAAGTGTCACTGATCTATTATAAATTTTGTACTAATTTAATACTAAATCTGCGACACTTATTCTGGGACGAAG
AGAGTATAATGTT
dot-bracket secondary structure
.........((((.((.(((((((.((((((((((...(((.((.((((((((.......))))).))).)).)))...)))))))))).))))))).))
.))))........
SIMILARITIES| miRBase osa-MIR1862d: 0.00009 PMRD osa-miRf11619-akr: 0.00009 microPC miR1439: 0.0003 | UniProt no hits RFAM MIR1122: 7e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
