ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTGTAAACTAATATAAGAC miRNA* CTTAAATTAATTTACAGAGGG mismatches: 3 bulges: 0 |
pre-miRNA
TCAACTATTGTTAAATATGACCTCTGTAAACTAATATAAGACGTTTTTATAGTTCAATTTGAACTGCAAAAACATCTTAAATTAATTTACAGAGGGATGT
ATATCTGTCATGAG
dot-bracket secondary structure
....((..((.((.(((((.((((((((((.((((.(((((.((((((.(((((((...))))))).)))))).))))).)))).))))))))))....)
)))).)).))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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TCAACTATTGTTAAATATGACCTCTGTAAACTAATATAAGACGTTTTTATAGTTCAATTTGAACTGCAAAAACATCTTAAATTAATTTACAGAGGGATGT
ATATCTGTCATGAG
dot-bracket secondary structure
....((..((.((.(((((.((((((((((.((((.(((((.((((((.(((((((...))))))).)))))).))))).)))).))))))))))....)
)))).)).))..))
SIMILARITIES| miRBase no hits PMRD tur-miR1120: 0.000006 microPC no hits | UniProt no hits RFAM MIR1122: 0.000000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
