ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCCCATAATAT miRNA* ATTGTGGGACGGTGGGAGTAC mismatches: 1 bulges: 0 |
pre-miRNA
CCTGGAGTCAGAAATGGTTACACTCCCTCCGTCCCATAATATAAGATCGTTTTTCAAGCTATGTTAGCTTGAGAAACGATCTTATATTGTGGGACGGTGG
GAGTACTATCTATCTATCAAGAGT
dot-bracket secondary structure
..((((...(((..((((...((((((.(((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))).))
))))))))))).))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTGGAGTCAGAAATGGTTACACTCCCTCCGTCCCATAATATAAGATCGTTTTTCAAGCTATGTTAGCTTGAGAAACGATCTTATATTGTGGGACGGTGG
GAGTACTATCTATCTATCAAGAGT
dot-bracket secondary structure
..((((...(((..((((...((((((.(((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))).))
))))))))))).))))........
SIMILARITIES| miRBase tae-MIR1120: 0.0000004 PMRD tae-miR1120: 0.0000004 microPC miR1436: 0.0000000000001 | UniProt no hits RFAM MIR1122: 5e-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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