ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR397
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGTTGAGTGCAGCGTTGATG miRNA* CCGGCGCTGCACGCAATGACG mismatches: 3 bulges: 0 |
pre-miRNA
GGAGGAAGAGCCGCAGAGGTGCCGTTGAGTGCAGCGTTGATGAACCGTCCGGCCATGGCCCGTCCGCCTCCACCGAGGCCGGAGCGGTTCACCGGCGCTG
CACGCAATGACGCCTCTGCTTTCTCCGGCG
dot-bracket secondary structure
(((((((.....(((((((((.(((((.(((((((((((.((((((((((((((.(((..............))).))))))).))))))).))))))))
))).))))).))))))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
GGAGGAAGAGCCGCAGAGGTGCCGTTGAGTGCAGCGTTGATGAACCGTCCGGCCATGGCCCGTCCGCCTCCACCGAGGCCGGAGCGGTTCACCGGCGCTG
CACGCAATGACGCCTCTGCTTTCTCCGGCG
dot-bracket secondary structure
(((((((.....(((((((((.(((((.(((((((((((.((((((((((((((.(((..............))).))))))).))))))).))))))))
))).))))).))))))))))))))))....
SIMILARITIES| miRBase hvu-MIR397: 1e-59 PMRD tae-miR2029: 0.0000000000004 microPC miR397: 0.0004 | UniProt no hits RFAM MIR397: 0.0005 | most similar mature miRNAs |
Identical with: hvu-MIR397 from miRBase (MNEST041891) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
